Project Details:
Redesign of Handling of Tautomerism for InChI V2
| Project No.: | 2012-023-2-800 |
| Start date: | 2012-08-01 |
| End date: | 0000-00-00 |
| Division: | Chemical Nomenclature and Structure Representation Division |
To establish requirements and guidelines for improving the handling of tautomerism in the next generation of the InChI algorithm to address the shortcomings of the current algorithm. The intended outcome is the world-wide adoption of the new standard with the ensuing more comprehensive and chemically more accurate handling of chemical structures capable of tautomerism in, e.g., large databases, chemistry books and journal articles etc.
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The IUPAC International Chemical Identifier (InChI) algorithm is now well established as a powerful means of denoting the basic chemical structure of a well-defined, small (<1024 atoms) organic molecule as a unique machine-readable character string, suitable for electronic data storage, searching and exchange. The IUPAC Division VIII InChI Subcommittee is now starting work on a complete overhaul of the InChI algorithm, i.e. the beginning of plans for a version 2 of InChI. A crucial part of this work is intended to address the known shortcomings of the current InChI algorithm pertaining to the handling (or lack thereof) of various types of tautomerism.
Important issues intended to be addressed in this context are discussed in, e.g., M. Sitzmann, W.-D. Ihlenfeldt, M. C. Nicklaus, "Tautomerism in large databases", J Comput Aided Mol Des (2010) 24:521-551;Â http://dx.doi.org/10.1007/s10822-010-9346-4.
The present project is devoted to analysis of the current handling of the various types of tautomerism in InChI, their deficiencies, their connection with metal disconnection and protonation/deprotonation, comparison of InChI’s current algorithm with approaches published in literature and/or used in other databases and software, and putting together a list of new requirements of how an InChI V2 algorithm should handle tautomerism and related issues.